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Workflow MOLECULAR-LIBRARYSEARCH-GC (version release_15)
Status

Traceback (most recent call last): File "/data/beta-proteomics2/tools/molecularsearch-gc/release_15/add_mshub_data.py", line 59, in <module> main() File "/data/beta-proteomics2/tools/molecularsearch-gc/release_15/add_mshub_data.py", line 51, in main quant_table_df = pd.read_csv(args.quantTable, skiprows=[0, 2, 3]) File "/data/beta-proteomics2/tools/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 678, in parser_f return _read(filepath_or_buffer, kwds) File "/data/beta-proteomics2/tools/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 440, in _read parser = TextFileReader(filepath_or_buffer, **kwds) File "/data/beta-proteomics2/tools/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 787, in __init__ self._make_engine(self.engine) File "/data/beta-proteomics2/tools/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 1014, in _make_engine self._engine = CParserWrapper(self.f, **self.options) File "/data/beta-proteomics2/tools/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 1708, in __init__ self._reader = parsers.TextReader(src, **kwds) File "pandas/_libs/parsers.pyx", line 384, in pandas._libs.parsers.TextReader.__cinit__ File "pandas/_libs/parsers.pyx", line 695, in pandas._libs.parsers.TextReader._setup_parser_source FileNotFoundError: File b'' does not exist Tool execution terminates abnormally with exit code [1]
Userrobinschmid (robinschmid@uni-muenster.de), WWU Muenster
Title
[GC] mzmine export test v15
Date Created 2019-11-05 13:49:08.0
Execution Time 18 hours 32 minutes 13 seconds
Progress
Deconvolved EI Spectra MGF File
robinschmid/gc/20191105_kovats_dro.mgf
Spectral Library
staticlibs/NIST_EI_14/NIST_GC_EI_MAX_LIBRARY.mgf
staticlibs/NIST_WILEY_KOVATS_LIBRARY_FILE/kovats_library_file.csv
Feature Quantification Table
robinschmid/gc/20191105_kovats_dro_quant.csv
Input Carbon Marker File (Optional)
robinschmid/gc/kovats_dro_by_mzmine.csv